custom Mex_5_UAAUAW 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=6.10391e-07

Neutral set average density: 0.00237583

Different set average density: 0.00120724

Presence of motif

           motif_present
gene_set    absent present
  different    940      54
  neutral     1744     209

Fisher's exact test: p=1.06129e-06

Binomial GLM: p=3.22338e-06

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4758  -0.4758  -0.4758  -0.3342   2.4136  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -2.1216     0.0732 -28.984  < 2e-16 ***
differentTRUE  -0.7353     0.1579  -4.656 3.22e-06 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1772.8  on 2946  degrees of freedom
Residual deviance: 1748.5  on 2945  degrees of freedom
AIC: 1752.5

Number of Fisher Scoring iterations: 5