custom Mex_5_UUUUUUUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.861287

Neutral set average density: 0.00203789

Different set average density: 0.00197183

Presence of motif

           motif_present
gene_set    absent present
  different    941      53
  neutral     1843     110

Fisher's exact test: p=0.798325

Binomial GLM: p=0.735948

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3405  -0.3405  -0.3405  -0.3310   2.4213  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.81867    0.09815 -28.718   <2e-16 ***
differentTRUE -0.05798    0.17194  -0.337    0.736    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1260.5  on 2946  degrees of freedom
Residual deviance: 1260.4  on 2945  degrees of freedom
AIC: 1264.4

Number of Fisher Scoring iterations: 5