custom Mex_5_UUUUUUUU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.982261

Neutral set average density: 0.00090937

Different set average density: 0.000911469

Presence of motif

           motif_present
gene_set    absent present
  different    807     187
  neutral     1592     361

Fisher's exact test: p=0.841312

Binomial GLM: p=0.828445

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6456  -0.6456  -0.6393  -0.6393   1.8375  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.48387    0.05829 -25.455   <2e-16 ***
differentTRUE  0.02165    0.09992   0.217    0.828    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2830.9  on 2946  degrees of freedom
Residual deviance: 2830.8  on 2945  degrees of freedom
AIC: 2834.8

Number of Fisher Scoring iterations: 4