custom Mex_5_UUUUUUUU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.264213

Neutral set average density: 0.00365591

Different set average density: 0.00311871

Presence of motif

           motif_present
gene_set    absent present
  different    916      78
  neutral     1771     182

Fisher's exact test: p=0.192273

Binomial GLM: p=0.183381

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4423  -0.4423  -0.4423  -0.4043   2.2561  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.27529    0.07784  -29.23   <2e-16 ***
differentTRUE -0.18801    0.14132   -1.33    0.183    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1758.8  on 2946  degrees of freedom
Residual deviance: 1757.0  on 2945  degrees of freedom
AIC: 1761

Number of Fisher Scoring iterations: 5