custom Mex_5_UUUUUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.672079

Neutral set average density: 0.008766

Different set average density: 0.00841046

Presence of motif

           motif_present
gene_set    absent present
  different    797     197
  neutral     1547     406

Fisher's exact test: p=0.562351

Binomial GLM: p=0.537352

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6827  -0.6827  -0.6827  -0.6646   1.7992  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.33772    0.05576 -23.990   <2e-16 ***
differentTRUE -0.05993    0.09716  -0.617    0.537    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2986.7  on 2946  degrees of freedom
Residual deviance: 2986.3  on 2945  degrees of freedom
AIC: 2990.3

Number of Fisher Scoring iterations: 4