custom Mex_5_UUUUUU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.625006

Neutral set average density: 0.00352893

Different set average density: 0.00364185

Presence of motif

           motif_present
gene_set    absent present
  different    495     499
  neutral      959     994

Fisher's exact test: p=0.72597

Binomial GLM: p=0.721313

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.193  -1.193   1.162   1.162   1.174  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)    0.03585    0.04526   0.792    0.428
differentTRUE -0.02780    0.07793  -0.357    0.721

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4084.9  on 2946  degrees of freedom
Residual deviance: 4084.8  on 2945  degrees of freedom
AIC: 4088.8

Number of Fisher Scoring iterations: 3