custom Mex_5_UUUUUU 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00434805

Neutral set average density: 0.0141833

Different set average density: 0.011167

Presence of motif

           motif_present
gene_set    absent present
  different    766     228
  neutral     1394     559

Fisher's exact test: p=0.00095499

Binomial GLM: p=0.000995094

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8212  -0.8212  -0.7219   1.5817   1.7160  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.91378    0.05006 -18.253  < 2e-16 ***
differentTRUE -0.29805    0.09054  -3.292 0.000995 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3420.3  on 2946  degrees of freedom
Residual deviance: 3409.3  on 2945  degrees of freedom
AIC: 3413.3

Number of Fisher Scoring iterations: 4