custom PAS_AAUAAA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.149918

Neutral set average density: 0.00116743

Different set average density: 0.00146881

Presence of motif

           motif_present
gene_set    absent present
  different    926      68
  neutral     1844     109

Fisher's exact test: p=0.18944

Binomial GLM: p=0.174236

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3765  -0.3765  -0.3389  -0.3389   2.4024  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.82834    0.09857 -28.693   <2e-16 ***
differentTRUE  0.21698    0.15969   1.359    0.174    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1338.7  on 2946  degrees of freedom
Residual deviance: 1336.9  on 2945  degrees of freedom
AIC: 1340.9

Number of Fisher Scoring iterations: 5