custom PAS_AAUAAA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.961501

Neutral set average density: 0.000847926

Different set average density: 0.00084507

Presence of motif

           motif_present
gene_set    absent present
  different    697     297
  neutral     1330     623

Fisher's exact test: p=0.27444

Binomial GLM: p=0.263202

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8766  -0.8766  -0.8426   1.5117   1.5543  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.75839    0.04855 -15.621   <2e-16 ***
differentTRUE -0.09467    0.08461  -1.119    0.263    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3659.2  on 2946  degrees of freedom
Residual deviance: 3657.9  on 2945  degrees of freedom
AIC: 3661.9

Number of Fisher Scoring iterations: 4