custom PAS_AAUAAA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=7.66203e-26

Neutral set average density: 0.00300051

Different set average density: 0.000724346

Presence of motif

           motif_present
gene_set    absent present
  different    960      34
  neutral     1679     274

Fisher's exact test: p=9.05577e-22

Binomial GLM: p=2.3733e-16

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5498  -0.5498  -0.5498  -0.2638   2.5982  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.81283    0.06516 -27.823  < 2e-16 ***
differentTRUE -1.52775    0.18628  -8.202 2.37e-16 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1973.8  on 2946  degrees of freedom
Residual deviance: 1880.2  on 2945  degrees of freedom
AIC: 1884.2

Number of Fisher Scoring iterations: 6