custom Pos_1 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.267896

Neutral set average density: 0.00265643

Different set average density: 0.00276056

Presence of motif

           motif_present
gene_set    absent present
  different    257     737
  neutral      548    1405

Fisher's exact test: p=0.22086

Binomial GLM: p=0.204315

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-1.6448  -1.5943   0.7735   0.8116   0.8116  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    0.94152    0.05036  18.694   <2e-16 ***
differentTRUE  0.11199    0.08823   1.269    0.204    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3456.1  on 2946  degrees of freedom
Residual deviance: 3454.5  on 2945  degrees of freedom
AIC: 3458.5

Number of Fisher Scoring iterations: 4