custom Reverse_PAS_UUUAUU 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0987498

Neutral set average density: 0.00287762

Different set average density: 0.00342052

Presence of motif

           motif_present
gene_set    absent present
  different    842     152
  neutral     1712     241

Fisher's exact test: p=0.029331

Binomial GLM: p=0.0261064

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5761  -0.5761  -0.5132  -0.5132   2.0456  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -1.9606     0.0688 -28.497   <2e-16 ***
differentTRUE   0.2487     0.1118   2.225   0.0261 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2314.7  on 2946  degrees of freedom
Residual deviance: 2309.8  on 2945  degrees of freedom
AIC: 2313.8

Number of Fisher Scoring iterations: 4