custom Reverse_PAS_UUUAUU 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.348015

Neutral set average density: 0.000981055

Different set average density: 0.00103823

Presence of motif

           motif_present
gene_set    absent present
  different    621     373
  neutral     1234     719

Fisher's exact test: p=0.716656

Binomial GLM: p=0.705942

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9699  -0.9582  -0.9582   1.4001   1.4137  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.54015    0.04692 -11.513   <2e-16 ***
differentTRUE  0.03040    0.08058   0.377    0.706    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3885.6  on 2946  degrees of freedom
Residual deviance: 3885.5  on 2945  degrees of freedom
AIC: 3889.5

Number of Fisher Scoring iterations: 4