custom Rsp_3_CAGGAC 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.157404

Neutral set average density: 0

Different set average density: 4.02414e-05

Presence of motif

           motif_present
gene_set    absent present
  different    992       2
  neutral     1953       0

Fisher's exact test: p=0.11369

Binomial GLM: p=0.995059

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0635  -0.0635   0.0000   0.0000   3.5238  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)     -24.57    2964.53  -0.008    0.993
differentTRUE    18.36    2964.53   0.006    0.995

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 33.18  on 2946  degrees of freedom
Residual deviance: 28.83  on 2945  degrees of freedom
AIC: 32.83

Number of Fisher Scoring iterations: 23