ANOVA looking for any differences between YPEG, GAL, GLU10 and GLU20 groups

18 June 2014

Genewise expression level

Raw data format: YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
5733 of 6532 features kept after filtering
(required at least one sample with 10 reads)
4.4 degrees of freedom in prior
1143 with fdr<=0.01
1938 with fdr<=0.05

Genewise tail length

Raw data format: YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
5304 of 6532 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 278.6 / polya_read_count + 0.000763 * tail_length^2
13.3 degrees of freedom in prior
271 with fdr<=0.01
501 with fdr<=0.05

Peakwise expression level

Raw data format: YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
12514 of 12631 features kept after filtering
(required at least one sample with 10 reads)
4.7 degrees of freedom in prior
1402 with fdr<=0.01
2722 with fdr<=0.05

Peakwise tail length

Raw data format: YPEGRep1; YPEGRep2; GALRep1; GALRep2; GLU10Rep1; GLU10Rep2; GLU20Rep1; GLU20Rep2
10400 of 12631 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 240.9 / polya_read_count + 0.000907 * tail_length^2
6.6 degrees of freedom in prior
173 with fdr<=0.01
388 with fdr<=0.05

Peak-pair expression shift

Raw data format: YPEGRep1-peak1; YPEGRep2-peak1; GALRep1-peak1; GALRep2-peak1; GLU10Rep1-peak1; GLU10Rep2-peak1; GLU20Rep1-peak1; GLU20Rep2-peak1; YPEGRep1-peak2; YPEGRep2-peak2; GALRep1-peak2; GALRep2-peak2; GLU10Rep1-peak2; GLU10Rep2-peak2; GLU20Rep1-peak2; GLU20Rep2-peak2
1715 of 1717 features kept after filtering
(required at least one sample with 10 reads)
6.6 degrees of freedom in prior
1 with fdr<=0.01
17 with fdr<=0.05

Peak-pair tail length shift

Raw data format: YPEGRep1-peak1; YPEGRep2-peak1; GALRep1-peak1; GALRep2-peak1; GLU10Rep1-peak1; GLU10Rep2-peak1; GLU20Rep1-peak1; GLU20Rep2-peak1; YPEGRep1-peak2; YPEGRep2-peak2; GALRep1-peak2; GALRep2-peak2; GLU10Rep1-peak2; GLU10Rep2-peak2; GLU20Rep1-peak2; GLU20Rep2-peak2
1393 of 1717 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 246.7 / polya_read_count + 0.000896 * tail_length^2
22.5 degrees of freedom in prior
0 with fdr<=0.01
2 with fdr<=0.05