ANOVA

19 June 2014

Genewise expression level

Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
10340 of 31753 features kept after filtering
(required at least one sample with 10 reads)
6.7 degrees of freedom in prior
2565 with fdr<=0.01
4848 with fdr<=0.05

Genewise tail length

Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
6503 of 31753 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 948.8 / polya_read_count + 0.003411 * tail_length^2
10.2 degrees of freedom in prior
57 with fdr<=0.01
177 with fdr<=0.05

Peakwise expression level

Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
13413 of 13453 features kept after filtering
(required at least one sample with 10 reads)
6.7 degrees of freedom in prior
2383 with fdr<=0.01
4715 with fdr<=0.05

Peakwise tail length

Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2; gld3-RNAi-Rep1; gld3-RNAi-Rep2; gld2-RNAi-Rep1; gld2-RNAi-Rep2; mex5-RNAi-Rep1; mex5-RNAi-Rep2; mex6-RNAi-Rep1; mex6-RNAi-Rep2
8867 of 13453 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 810.2 / polya_read_count + 0.003820 * tail_length^2
3.8 degrees of freedom in prior
17 with fdr<=0.01
68 with fdr<=0.05

Peak-pair expression shift

Raw data format: N2-Rep1-peak1; N2-Rep2-peak1; pos1-RNAi-Rep1-peak1; pos1-RNAi-Rep2-peak1; gld3-RNAi-Rep1-peak1; gld3-RNAi-Rep2-peak1; gld2-RNAi-Rep1-peak1; gld2-RNAi-Rep2-peak1; mex5-RNAi-Rep1-peak1; mex5-RNAi-Rep2-peak1; mex6-RNAi-Rep1-peak1; mex6-RNAi-Rep2-peak1; N2-Rep1-peak2; N2-Rep2-peak2; pos1-RNAi-Rep1-peak2; pos1-RNAi-Rep2-peak2; gld3-RNAi-Rep1-peak2; gld3-RNAi-Rep2-peak2; gld2-RNAi-Rep1-peak2; gld2-RNAi-Rep2-peak2; mex5-RNAi-Rep1-peak2; mex5-RNAi-Rep2-peak2; mex6-RNAi-Rep1-peak2; mex6-RNAi-Rep2-peak2
1488 of 1488 features kept after filtering
(required at least one sample with 10 reads)
6.9 degrees of freedom in prior
7 with fdr<=0.01
17 with fdr<=0.05

Peak-pair tail length shift

Raw data format: N2-Rep1-peak1; N2-Rep2-peak1; pos1-RNAi-Rep1-peak1; pos1-RNAi-Rep2-peak1; gld3-RNAi-Rep1-peak1; gld3-RNAi-Rep2-peak1; gld2-RNAi-Rep1-peak1; gld2-RNAi-Rep2-peak1; mex5-RNAi-Rep1-peak1; mex5-RNAi-Rep2-peak1; mex6-RNAi-Rep1-peak1; mex6-RNAi-Rep2-peak1; N2-Rep1-peak2; N2-Rep2-peak2; pos1-RNAi-Rep1-peak2; pos1-RNAi-Rep2-peak2; gld3-RNAi-Rep1-peak2; gld3-RNAi-Rep2-peak2; gld2-RNAi-Rep1-peak2; gld2-RNAi-Rep2-peak2; mex5-RNAi-Rep1-peak2; mex5-RNAi-Rep2-peak2; mex6-RNAi-Rep1-peak2; mex6-RNAi-Rep2-peak2
714 of 1488 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 856.0 / polya_read_count + 0.003323 * tail_length^2
13.0 degrees of freedom in prior
1 with fdr<=0.01
1 with fdr<=0.05