N2 vs pos1
19 June 2014
Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2
9050 of 31753 features kept after filtering
(required at least one sample with 10 reads)
3.9 degrees of freedom in prior
0 with fdr<=0.01
245 with fdr<=0.05
Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2
7166 of 31753 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 936.7 / polya_read_count + 0.003480 * tail_length^2
20.8 degrees of freedom in prior
3 with fdr<=0.01
3 with fdr<=0.05
Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2
12655 of 13453 features kept after filtering
(required at least one sample with 10 reads)
5.7 degrees of freedom in prior
2 with fdr<=0.01
1376 with fdr<=0.05
Raw data format: N2-Rep1; N2-Rep2; pos1-RNAi-Rep1; pos1-RNAi-Rep2
10362 of 13453 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 812.2 / polya_read_count + 0.003986 * tail_length^2
3.8 degrees of freedom in prior
0 with fdr<=0.01
0 with fdr<=0.05
Raw data format: N2-Rep1-peak1; N2-Rep2-peak1; pos1-RNAi-Rep1-peak1; pos1-RNAi-Rep2-peak1; N2-Rep1-peak2; N2-Rep2-peak2; pos1-RNAi-Rep1-peak2; pos1-RNAi-Rep2-peak2
1482 of 1488 features kept after filtering
(required at least one sample with 10 reads)
4.3 degrees of freedom in prior
0 with fdr<=0.01
0 with fdr<=0.05
Raw data format: N2-Rep1-peak1; N2-Rep2-peak1; pos1-RNAi-Rep1-peak1; pos1-RNAi-Rep2-peak1; N2-Rep1-peak2; N2-Rep2-peak2; pos1-RNAi-Rep1-peak2; pos1-RNAi-Rep2-peak2
1061 of 1488 features kept after filtering
(required sufficient samples with 10 poly(A) reads to fit linear model)
variance = 861.9 / polya_read_count + 0.003365 * tail_length^2
10.5 degrees of freedom in prior
0 with fdr<=0.01
0 with fdr<=0.05