RNA Systems Biology Laboratory

Software

Tail Tools

PAT-Seq analysis software

Fitnoise

Statistical analysis of RNA-Seq, PAT-Seq and microarray data using linear models. Find significant differential expression and differential polyadenylation length.

Varistran

R package providing a variance stabilizing transformation of RNA-seq data, and RNA-seq visualization tools.

Topconfects

R pacakge for computing confidence bounds on differential gene expression. More advanced applications include detecting shifting in the preferred 3'-ends of transcripts.